Zhurkin, Victor B: search on Z-Library

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1

Computer-Aided Design Databases

Alharbi, Bader A., Alshammari, Thamir H., Felton, Nathan L., Zhurkin, Victor B., Cui, Feng

Journal:

IEEE Design & Test of Computers

Year:

1985

Language:

english

File:

PDF, 3.76 MB

english, 1985

2

Interaction of spermine with different forms of DNA. A conformational study

Victor B. Zhurkin, Yury P. Lysov, Valery I. Ivanov

Journal:

Year:

1980

Language:

english

File:

PDF, 810 KB

english, 1980

3

The DNA Phosphate orientation. Infrared data and energetically favorable structures

Walter Pohle, Victor B. Zhurkin, Hartmut Fritzsche

Journal:

Year:

1984

Language:

english

File:

PDF, 1.00 MB

english, 1984

4

Impact of Alu repeats on the evolution of human p53 binding sites

Feng Cui, Michael V Sirotin, Victor B Zhurkin

Journal:

Year:

2011

Language:

english

File:

PDF, 1.13 MB

english, 2011

5

The first thirty years of nucleosome positioning: Comment on “Cracking the chromatin code: Precise rule of nucleosome positioning” by Trifonov

Victor B. Zhurkin

Journal:

Physics of Life Reviews

Year:

2011

Language:

english

File:

PDF, 82 KB

english, 2011

6

10.1038/11519

Panyutin, Igor G., Karamychev, Valeri N., Zhurkin, Victor B., Garges, Susan, Neumann, Ronald D.

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 817 KB

english, 1999

7

10.1038/87595

Geanacopoulos, Mark, Vasmatzis, George, Zhurkin, Victor B., Adhya, Sankar

Journal:

Natural Structural Biology

Year:

2001

Language:

english

File:

PDF, 1.37 MB

english, 2001

8

Sandwich Double-Decker Lanthanide(III) “Intracavity” Complexes Based on Clamshell-Type Phthalocyanine Ligands: Synthesis, Spectral, Electrochemical, and Spectroelectrochemical Investigations

Dr. Victor E. Pushkarev , Dr. Alexander Yu. Tolbin, Fedor E. Zhurkin, Dr. Nataliya E. Borisova, Dr. Stanislav A. Trashin, Prof. Larisa G. Tomilova , Prof. Nikolay S. Zefirov

Journal:

Chemistry - A European Journal

Year:

2012

Language:

english

File:

PDF, 1.02 MB

english, 2012

9

Working the kinks out of nucleosomal DNA

Wilma K Olson, Victor B Zhurkin

Journal:

Current Opinion in Structural Biology

Year:

2011

Language:

english

File:

PDF, 1.46 MB

english, 2011

10

Modeling DNA deformations

Wilma K Olson, Victor B Zhurkin

Journal:

Current Opinion in Structural Biology

Year:

2000

Language:

english

File:

PDF, 1.09 MB

english, 2000

11

Influence of Fluctuations on DNA Curvature: A Comparison of Flexible and Static Wedge Models of Intrinsically Bent DNA

Wilma K. Olson, Nancy L. Marky, Robert L. Jernigan, Victor B. Zhurkin

Journal:

Journal of Molecular Biology

Year:

1993

File:

PDF, 1.40 MB

1993

12

CRP-DNA Complexes: Inducing theA-likeForm in the Binding Sites with an Extended Central Spacer

Valery I. Ivanov, Lucy E. Minchenkova, Boris K. Chernov, Peter McPhie, Sangryeol Ryu, Susan Garges, Ann M. Barber, Victor B. Zhurkin, Sankar Adhya

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 645 KB

english, 1995

13

Probing the Structure of a Putative Intermediate in Homologous Recombination: The Third Strand in the Parallel DNA Triplex is in Contact with the Major Groove of the Duplex

Moon G. Kim, Victor B. Zhurkin, Robert L. Jernigan, Daniel R. Camerini-Otero

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 1.92 MB

english, 1995

14

B-DNA Twisting Correlates with Base-pair Morphology

Andrey A. Gorin, Victor B. Zhurkin, Wilma K.

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 763 KB

english, 1995

15

A role for CH…O interactions in protein-DNA recognition

Yael Mandel-Gutfreund, Hanah Margalit, Robert L Jernigan, Victor B Zhurkin

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 349 KB

english, 1998

16

DNA stretching and compression: large-scale simulations of double helical structures

Konstantin M. Kosikov, Andrey A. Gorin, Victor B. Zhurkin, Wilma K. Olson

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 814 KB

english, 1999

17

Radioprobing of a RecA-three-stranded DNA complex with iodine 125: evidence for recognition of homology in the major groove of the target duplex

Vladislav A Malkov, Igor G Panyutin, Ronald D Neumann, Victor B Zhurkin, R.Daniel Camerini-Otero

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 531 KB

english, 2000

18

Structural Basis for SRY-dependent 46-X,Y Sex Reversal: Modulation of DNA Bending by a Naturally Occurring Point Mutation

Elizabeth C. Murphy, Victor B. Zhurkin, John M. Louis, Gabriel Cornilescu, G.Marius Clore

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 1.03 MB

english, 2001

19

Specific alignment of nucleosomes on DNA correlates with periodic distribution of purine—pyrimidine and pyrimidine—purine dimers

Victor B. Zhurkin

Journal:

Year:

1983

Language:

english

File:

PDF, 474 KB

english, 1983

20

“Antiparallel” DNA Loop in Gal Repressosome Visualized by Atomic Force Microscopy

Konstantin Virnik, Yuri L Lyubchenko, Mikhail A Karymov, Paul Dahlgren, Michael Y Tolstorukov, Szabolcs Semsey, Victor B Zhurkin, Sankar Adhya

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.63 MB

english, 2003

21

Protein–DNA Hydrophobic Recognition in the Minor Groove is Facilitated by Sugar Switching

Michael Y. Tolstorukov, Robert L. Jernigan, Victor B. Zhurkin

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.12 MB

english, 2004

22

A Novel Roll-and-Slide Mechanism of DNA Folding in Chromatin: Implications for Nucleosome Positioning

Michael Y. Tolstorukov, Andrew V. Colasanti, David M. McCandlish, Wilma K. Olson, Victor B. Zhurkin

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.68 MB

english, 2007

23

Valery (Chrom) Ivanov In memoriam

Frank-Kamenetskii, Maxim, Trifonov, Edward, Zhurkin, Victor, Danilov, Victor, Sarma, Mukti, Sarma, Ramaswamy

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 124 KB

english, 2013

24

Combined Micrococcal Nuclease and Exonuclease III Digestion Reveals Precise Positions of the Nucleosome Core/Linker Junctions: Implications for High-Resolution Nucleosome Mapping

Nikitina, Tatiana, Wang, Difei, Gomberg, Misha, Grigoryev, Sergei A., Zhurkin, Victor B.

Journal:

Journal of Molecular Biology

Year:

2013

Language:

english

File:

PDF, 1.71 MB

english, 2013

25

CRP-binding sites: evidence for two structural classes with 6-bp and 8-bp spacers

Barber, Ann M., Zhurkin, Victor B., Adhya, Sankar

Journal:

Year:

1993

Language:

english

File:

PDF, 1.08 MB

english, 1993

26

Sequence-Specific Asymmetric Binding of Linker Histone to Nucleosome

Zhurkin, Victor, Nikitina, Tatiana, Wang, Difei, Cui, Feng, Gomberg, Michael, Grigoryev, Sergei

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 37 KB

english, 2012

27

Memorial: Ralph P. Tittsler 1899–1967

Zhurkin, Victor, Nikitina, Tatiana, Wang, Difei, Cui, Feng, Gomberg, Michael, Grigoryev, Sergei

Journal:

Journal of Dairy Science

Year:

1968

Language:

english

File:

PDF, 171 KB

english, 1968

28

Hoogsteen or not Hoogsteen? Iodine-125 Radioprobing of the P53-Induced DNA Deformations

Zhurkin, Victor, Karamychev, Valery, Wang, Difei, Mazur, Sharlyn, Appella, Ettore, Neumann, Ronald, Panyutin, Igor

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 36 KB

english, 2013

29

Can nucleosomal DNA be described by an elastic model?

Zhurkin, Victor B., Olson, Wilma K.

Journal:

Physics of Life Reviews

Year:

2013

Language:

english

File:

PDF, 77 KB

english, 2013

30

Structural organization of rat ribosomal RNA genes: interspersed sequences and their putative role in the alignment of nucleosomes

Braga, Eleonora A., Avdonina, Tatyana A., Zhurkin, Victor B., Nosikov, Valery V.

Journal:

Year:

1985

Language:

english

File:

PDF, 1.26 MB

english, 1985

31

DNA Sequence-Dependent Deformability Deduced from Protein-DNA Crystal Complexes

Wilma K. Olson, Andrey A. Gorin, Xiang-Jun Lu, Lynette M. Hock and Victor B. Zhurkin

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.89 MB

english, 1998

32

p53-Induced DNA Bending and Twisting: p53 Tetramer Binds on the Outer Side of a DNA Loop and Increases DNA Twisting

Akhilesh K. Nagaich, Victor B. Zhurkin, Stewart R. Durell, Robert L. Jernigan, Ettore Appella and Rodney E. Harrington

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.50 MB

english, 1999

33

Sequence-dependent Kink-and-Slide Deformations of Nucleosomal DNA Facilitated by Histone Arginines Bound in the Minor Groove

Wang, Difei, Ulyanov, Nikolai B., Zhurkin, Victor B.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2010

Language:

english

File:

PDF, 3.28 MB

english, 2010

34

Correlations between deoxyribonucleic acid structural parameters and calculated circular dichroism spectra

Johnson, Bruce B., Dahl, Kenneth S., Tinoco, Ignacio, Ivanov, Valery I., Zhurkin, Victor B.

Journal:

Year:

1981

Language:

english

File:

PDF, 739 KB

english, 1981

35

Jon Widom, the Scientist

Trifonov, Edward N., Zhurkin, Victor B.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 91 KB

english, 2011

36

Structure-based Analysis of DNA Sequence Patterns Guiding Nucleosome Positioning in vitro

Cui, Feng, Zhurkin, Victor B.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2010

Language:

english

File:

PDF, 3.67 MB

english, 2010

37

62 Distinct nucleosome organization around p53 response elements associated with cell cycle arrest and apoptosis

Cui, Feng, Zhurkin, Victor B.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 182 KB

english, 2013

38

DNA Bending and Sugar Switching

Kamath, Shantaram, Sarma, Mukti H., Zhurkin, Victor B., Turner, Christopher J., Sarma, Ramaswamy H.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2000

Language:

english

File:

PDF, 246 KB

english, 2000

39

Radioprobing the conformation of DNA in a p53-DNA complex

Karamychev, Valeri N., Wang, Difei, Mazur, Sharlyn J., Appella, Ettore, Neumann, Ronald D., Zhurkin, Victor B., Panyutin, Igor G.

Journal:

International Journal of Radiation Biology

Year:

2012

Language:

english

File:

PDF, 463 KB

english, 2012

40

Intramolecular Recombination R-Triplex in Solution: Stabilization by bis-intercalator YOYO

Kaluzhny, Dmitry N., Timoshin, Vladimir V., Borisova, Olga F., Zhurkin, Victor B., Florentiev, Vladimir L., Shchyolkina, Anna K.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2008

Language:

english

File:

PDF, 739 KB

english, 2008

41

64 Hoogsteen or not Hoogsteen? Iodine-125 radioprobing of the p53-induced DNA deformations

Panyutin, Igor G., Karamychev, Valery N., Neumann, Ronald D., Mazur, Sharlyn, Appella, Ettore, Wang, Difei, Zhurkin, Victor B.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 66 KB

english, 2013

42

nuMap: A Web Platform for Accurate Prediction of Nucleosome Positioning

Alharbi, Bader A., Alshammari, Thamir H., Felton, Nathan L., Zhurkin, Victor B., Cui, Feng

Journal:

Genomics, Proteomics & Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.12 MB

english, 2014

43

Sequence-Dependent Anisotropic Flexibility of B-DNA A Conformational Study

Ulyanov, Nikolai B., Zhurkin, Victor B.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1984

Language:

english

File:

PDF, 1.15 MB

english, 1984

44

Sequence-Dependent Bending of DNA and Phasing of Nucleosomes

Zhurkin, Victor B.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1985

Language:

english

File:

PDF, 4.27 MB

english, 1985

45

Prediction of nucleosome rotational positioning in yeast and human genomes based on sequence-dependent DNA anisotropy

Cui, Feng, Chen, Linlin, LoVerso, Peter R, Zhurkin, Victor B

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 506 KB

english, 2014

46

Topological Polymorphism of the Two-Start Chromatin Fiber

Norouzi, Davood, Zhurkin, Victor B.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 2.51 MB

english, 2015

47

Torsional flexibility of DNA as revealed by conformational analysis

Zhurkin, Victor B., Lysov, Yury P., Florentiev, Vladimir L., Ivanov, Valery I.

Journal:

Nucleic Acids Research

Year:

1982

Language:

english

File:

PDF, 837 KB

english, 1982

48

Periodicity in DNA primary structure is defined by secondary structure of the coded protein

Zhurkin, Victor B.

Journal:

Nucleic Acids Research

Year:

1981

Language:

english

File:

PDF, 365 KB

english, 1981

49

Topological Polymorphism of Two-Start Nucleosome Fibers: A Stereochemical Analysis

Norouzi, Davood, Zhurkin, Victor B.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

50

Conformational variability of recombination R-triplex formed by the mammalian telomeric sequence

Shchyolkina, Anna K., Kaluzhny, Dmitry N., Borisova, Olga F., Arndt-Jovin, Donna J., Jovin, Thomas M., Zhurkin, Victor B.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 671 KB

english, 2015